DNA Fragmentation Software

For research purposes only in USA. Currently available for IVOS II and CEROS II systems only.

The DNA Fragmentation Software is designed to evaluate the level of DNA fragmentation of sperm smears prepared with the Halosperm® G2 test kit from Halotech® DNA (www.halotechdna.com), which is based on the Sperm Chromatin Dispersion (SCD) Test (Fernandez et al., J. Androl 24:59-66,2003; Fertil Steril 84:833-842,2005).

Principle of the Sperm Chromatin Dispersion Test

Intact unfixed spermatozoa (fresh, frozen/unthawed, diluted samples) are immersed in an inert agarose microgel on a pretreated slide. An initial acid treatment denatures DNA in those sperm cells with fragmented DNA. Following this, the lysing solution removes most of the nuclear proteins and, in the absence of massive DNA breakage, produces nucleoids with large halos of spreading DNA loops, emerging from a central core. However, the nucleoids from spermatozoa with fragmented DNA either do not show a dispersion halo or the halo is minimal.

In order to visualize the halos under bright field microscopy, prepared slides must be stained with a differential stain (included in Halopserm® G2 kit).

Sperm Classifications

Sperm without fragmented DNA will show one of two states:

  • Large halo: [ H ≥ C] the halo width is equal to or more than the minor diameter of the core
  • Medium halo: [C > H > 1/3 C] the halo size is between the large and small criteria (less than the diameter of the minor core but greater than 1/3 the diameter of the minor core).

Sperm with fragmented DNA will show one of three states:

  • Small halo: H ≤ 1/3 C] the halo width is equal to or less than 1/3 of the minor diameter of the core [
  • No halo
  • No halo and degraded: no halo is observed and an irregularly or weakly stained core is present.

Software Overview

The DNA Fragmentation software is accessed from within the CASA II motility program. The interface of the DNA Fragmentation software is similar to the interface of motility software, with the image area centrally located, analysis controls along the top and left sides, image thumbnails along the bottom, and information and results to the right.



The software analyzes the prepared sperm samples and measures the size of the halo (large halo, medium halo, small halo, or no halo)  and thus categorizes cells as non-fragmented, fragmented, or degraded. Results are shown cumulatively, per selected field (below) and per selected cell.

Below are examples of large, medium and small halos.


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Download this file (DNA-Frag-Flyer-June-2015.pdf)DNA-Frag-Flyer-June-2015.pdfDNA Fragmentation Flyer4562 kB